Some functional programs I made so far.
Harissa – Path simulation and inference of gene regulatory networks from single-cell data, based on a dynamical stochastic model (PDMP).
Multistate – Path simulation and computation of the analytical stationary distribution for a stochastic model of gene expression with a multistate promoter.
Halva – Multivariate analysis of ordinal data, designed specifically to handle missing values and latent variables in a similar way to FIML for Gaussian models.